HomozgosityMapper pedigree

HomozygosityMapper

Equus caballus

(Re)analyse your genotypes

(c) <A href="http://commons.wikimedia.org/wiki/User:Wilfredor">Wilfredor</A>
project
re-analyse
analysis name
analysis description
cases
controls
homogeneity require genetic homogeneity
Checking this box will only detect regions in which all affected individuals are homozygous. Use this for searches within single families.
exclude homozygous stretches in controls >= (recommended: )
Regions with the 'disease haplotype' in controls will be excluded when they are longer than this value. Use -1 if you don't want to use controls for region exclusion.
allele frequencies    not possible for VCF-based genotypes
limit block length leave empty to use standard settings for chip
only count blocks longer than lower limit; default is 0 (i.e. every homozygous block is counted)
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